PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0056.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 223aa    MW: 23428.6 Da    PI: 9.4633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0056.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-073156227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         k ++C+ f     Ck+Gd+C+FaHg+
  Kaladp0085s0056.2.p 31 KSRICNKFNSAEGCKFGDKCHFAHGE 56
                         6689999999999***********96 PP
2zf-CCCH32.61.4e-10189213126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC +f + G C +GdrC+FaHg
  Kaladp0085s0056.2.p 189 YKTKLCENFGK-GSCTFGDRCHFAHG 213
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-122759IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-72859IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1882957IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-53156IPR000571Zinc finger, CCCH-type
SMARTSM003560.0113156IPR000571Zinc finger, CCCH-type
SMARTSM003223.4E-1298168IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.5E-1698168IPR004088K Homology domain, type 1
PROSITE profilePS5008414.42499163IPR004088K Homology domain, type 1
SuperFamilySSF547912.19E-1599178IPR004088K Homology domain, type 1
CDDcd001053.80E-15101163No hitNo description
PfamPF000131.2E-11102165IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.0E-16185218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-9187219IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6188214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211188215IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8189213IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSNMGPAAVP PTRGMTAPPP MKNGSAPPAV KSRICNKFNS AEGCKFGDKC HFAHGEWEIG  60
KPFAPSFDDH RGMGTTTGRG GRMMDPSFPA PPPSGFGVNA STKISVDASL AGAIIGKGGV  120
NSKQICRQTG VKLSIRDHES DPNLRNIELE GSFEQISQAS GMVRELIVNV SPMSSAAPTK  180
MRAHASSNYK TKLCENFGKG SCTFGDRCHF AHGAAELRTS TT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643121.11e-107zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-74C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLI1N9801e-103I1N980_SOYBN; Uncharacterized protein
STRINGGLYMA19G32910.11e-103(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-57C3H family protein