PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0090.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 108aa    MW: 12052.5 Da    PI: 3.9809
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-0718501145
                         HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          l+d+ ++ G + W++Ia ++g g+ +k++ +++ 
  Kaladp0085s0090.1.p 18 ALLDVNEEVGDR-WDKIATMVG-GKNAKEVEDHYK 50
                         677888899988.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-9561IPR009057Homeodomain-like
CDDcd001671.17E-41653No hitNo description
Gene3DG3DSA:1.10.10.605.0E-51753IPR009057Homeodomain-like
PfamPF002491.2E-51750IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MLKDEAWSWE KNKKFELALL DVNEEVGDRW DKIATMVGGK NAKEVEDHYK ALVQDVNLIE  60
SGLFDDDDEL NELAEPQIIQ KSAITPPLGL CFLSVEIDSH QGCDCDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281797.12e-16PREDICTED: protein RADIALIS-like 4
TrEMBLA0A438BNG66e-15A0A438BNG6_VITVI; Transcription factor RADIALIS
STRINGVIT_07s0005g02730.t012e-15(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.11e-14RAD-like 4