PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0085s0150.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 889aa MW: 103503 Da PI: 9.8552

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0085s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	131	218	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYA++ GF +rks+s+ s+r++ei++++fvC+keg++ + ++ ++++++r + rt C ak++v ++ +g+w v+k++ HnH+l+ Kaladp0085s0150.1.p 131 DFYNEYARKNGFGIRKSSSSLSRRSREIIRKEFVCNKEGQKIITAST-TQQQKQRRKVRTCCLAKMEVGLR-SGRWIVDKFNDIHNHPLS 218 6***************************************99998.99999999***********.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-23	131	218	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-33	340	433	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.953	615	653	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-4	626	646	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-4	628	655	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence Send to blast
MTSFYGGIGY ELTPYFAYIS ILSSHPNWKI DALAWKIDSR RPTATPGKSP QLRPQSTRSS 60 TQFPGLHVDV ERQIRIPTDR EVETVLIVMD LVETENVEEV ANGSFEYVEE TRDYDHSFMG 120 KSFSTLEEAY DFYNEYARKN GFGIRKSSSS LSRRSREIIR KEFVCNKEGQ KIITASTTQQ 180 QKQRRKVRTC CLAKMEVGLR SGRWIVDKFN DIHNHPLSSP SKVGKHRSHC KFHRSEEGRK 240 LILDLHEAGL TPSQITKTMN SLNSNLHEDI SAKQCSEALR TQKRKYVGKE CHTIVRHFQE 300 RASSGEDFYF NVQLDVDGSL RSVFWADERS RTSYLEFGDV MVFDVTYKTN KFKMPFSPFV 360 GVNHHRQTIL FGGALLEDET EDTFVWLFEH FLKCMHNKPP RAVITDQDGA IRNVVKRVFP 420 DARHRFCAWH IKKHVIEHTQ PFRSLYKDFT ETYFKWIKSK TPAEFEIGWD VLKEKYNLGK 480 KGWFNTMYKE RHHWVKCYLK DTFFAGMTTS GRSESIHSFF DGYVNGNTPL SEFVTQYDRA 540 VESRRKSEEN EDFRTMNSLP VLITEHGIEE DAGKIYTRKM FELFQTQWLA SFSLDHIKPV 600 KEKNIFVYNV GSKQERENVE YDSESSCVNC SCAKFETDGV LCKHILYILK KKGFQSLPKK 660 YVLRRWTMDV RFRMGKSAFN IQGASEIPID ADITEGEKWA TRSICNQIIK NAQYCPSSFK 720 EFMNSARNCL SRLYDKMEAN EVREKNDDLR LRVSTYEVPE VELQSHQLTI LDPSSHKANK 780 GRPPRPTRIK SGIEINTKIK KKSKCSECKE KGHNKTTCPK KMPASRRRRS VMSRERWRWL 840 DFPVQRASRR RRSELGRFSN RAWGDFPGVA VGRRLSIFQA RASIFQLG*

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence Send to blast

MTSFYGGIGY ELTPYFAYIS ILSSHPNWKI DALAWKIDSR RPTATPGKSP QLRPQSTRSS  60
TQFPGLHVDV ERQIRIPTDR EVETVLIVMD LVETENVEEV ANGSFEYVEE TRDYDHSFMG  120
KSFSTLEEAY DFYNEYARKN GFGIRKSSSS LSRRSREIIR KEFVCNKEGQ KIITASTTQQ  180
QKQRRKVRTC CLAKMEVGLR SGRWIVDKFN DIHNHPLSSP SKVGKHRSHC KFHRSEEGRK  240
LILDLHEAGL TPSQITKTMN SLNSNLHEDI SAKQCSEALR TQKRKYVGKE CHTIVRHFQE  300
RASSGEDFYF NVQLDVDGSL RSVFWADERS RTSYLEFGDV MVFDVTYKTN KFKMPFSPFV  360
GVNHHRQTIL FGGALLEDET EDTFVWLFEH FLKCMHNKPP RAVITDQDGA IRNVVKRVFP  420
DARHRFCAWH IKKHVIEHTQ PFRSLYKDFT ETYFKWIKSK TPAEFEIGWD VLKEKYNLGK  480
KGWFNTMYKE RHHWVKCYLK DTFFAGMTTS GRSESIHSFF DGYVNGNTPL SEFVTQYDRA  540
VESRRKSEEN EDFRTMNSLP VLITEHGIEE DAGKIYTRKM FELFQTQWLA SFSLDHIKPV  600
KEKNIFVYNV GSKQERENVE YDSESSCVNC SCAKFETDGV LCKHILYILK KKGFQSLPKK  660
YVLRRWTMDV RFRMGKSAFN IQGASEIPID ADITEGEKWA TRSICNQIIK NAQYCPSSFK  720
EFMNSARNCL SRLYDKMEAN EVREKNDDLR LRVSTYEVPE VELQSHQLTI LDPSSHKANK  780
GRPPRPTRIK SGIEINTKIK KKSKCSECKE KGHNKTTCPK KMPASRRRRS VMSRERWRWL  840
DFPVQRASRR RRSELGRFSN RAWGDFPGVA VGRRLSIFQA RASIFQLG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756938.1	0.0	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-114	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0085s0150.1.p