PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0061.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 263aa    MW: 28839.4 Da    PI: 9.1199
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32183237155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+rWt++LH++Fve+v++LGGs+kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Kaladp0087s0061.1.p 183 KMRIRWTQDLHDKFVECVNRLGGSDKATPKAILKLMDSDGLTIFHVKSHLQKYRT 237
                          67****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.041180240IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28181238IPR009057Homeodomain-like
SuperFamilySSF466899.85E-17181237IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-24183238IPR006447Myb domain, plants
PfamPF002491.0E-8187236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSGCSYDFV NSSYSSSVSQ PDPRWHSMGG GGGGSEIMHS QTLITPTKLP STILSRLGSP  60
ASAFYATERC MAGFPQSRLD QTPSFPLDSQ FMNTLQSVVQ PHLLTANQYK SVFRNPATSG  120
NSTLAPTASI PFQGIPDDKF CSSSSANTGL FSWSQTDGRN QYVETCSSHT TNRFSPGSTL  180
SSKMRIRWTQ DLHDKFVECV NRLGGSDKAT PKAILKLMDS DGLTIFHVKS HLQKYRTAKY  240
LPESTEGIIF VLIYIYIYKS KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-24183240158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-24183240158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-24183240158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-24183240158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-24183240259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906743.12e-49myb family transcription factor PHL5-like isoform X2
TrEMBLA0A2K2A4J34e-47A0A2K2A4J3_POPTR; Uncharacterized protein
TrEMBLA0A2K2A4K27e-47A0A2K2A4K2_POPTR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.21e-37G2-like family protein