PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0087s0065.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 581aa    MW: 66472.7 Da    PI: 6.957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0087s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.1e-29120205187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+l+L+e+r++++++++++++k+plW+e+s+ m  e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f qlea
  Kaladp0087s0065.1.p 120 RWPRQETLTLLEIRSRLDKKFKEANQKGPLWDEISRIMsDEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFGQLEA 205
                          8*************************************99******************************98..55567******985 PP
2trihelix43.48.7e-14421489162
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkryk 62 
                          +Wt++e+ +L+e+r +me+++++ +       ++  lWee++++m++ g ++s+ +Ck+kwe +n +  
  Kaladp0087s0065.1.p 421 QWTESEITKLVEIRASMESKFEQYSgqcnnwgQEIVLWEEIANRMASLGSNKSSLMCKNKWEGINSYLV 489
                          7*********************8544567788********************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.034117180IPR001005SANT/Myb domain
PfamPF138374.8E-20119206No hitNo description
CDDcd122031.07E-21120185No hitNo description
PROSITE profilePS500906.876120178IPR017877Myb-like domain
PROSITE profilePS500906.574414485IPR017877Myb-like domain
SMARTSM007170.0084418487IPR001005SANT/Myb domain
CDDcd122032.81E-15420487No hitNo description
PfamPF138371.7E-8420492No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MEENHHHHHQ QHHQYEVVVP DFGLTPTPCY PSHPMQPAEI GYPRNPNPAA HHFDALMMAH  60
HHQNFQQLLL EESDHQLHSQ HHEIMMNRNN NNNGSSTSGG GFAADNTEAN ICDGGSGGVR  120
WPRQETLTLL EIRSRLDKKF KEANQKGPLW DEISRIMSDE HGYQRSGKKC REKFENLYKY  180
YKKTKEGKAG RQDGKHYRFF GQLEALYGEN KTNTAPLLPL HEGSHFSERN CFEHMKNSTP  240
SYTNHPNTLQ LCSNANYNSG GHHNFGSLSL SCNSSEFDSA SSSEDYNGLC GTGVCEIGSN  300
EKKEMKKRRN RRNWRAKIKD FIDSQMRSLI EKQEAWLAKT MTTIEQTEKE RLVREEEWKK  360
KEVERMNRER MFWAGERQWI EARDANLMEA LRKYNLGDVL GAFNSTHVMH VDHNESKHCN  420
QWTESEITKL VEIRASMESK FEQYSGQCNN WGQEIVLWEE IANRMASLGS NKSSLMCKNK  480
WEGINSYLVS SKKDDFYYKK QKGDVSRSLS GCYGTGDHGQ VEGIPIFGGT VSDQAAHNVS  540
SVPSSSVSAV NNNNIVPQES FFQFLMVDHE GSENLWGNNL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGcassava4.1_005544m1e-124(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-79Trihelix family protein