PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0088s0008.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 667aa MW: 76503.4 Da PI: 8.1413

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0088s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.1	2.4e-17	23	116	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Y+eYA+ G++vr ++++k +r++ i+ + + C+++g ++ + + + ++r +trtgCka+l++++ +d+ ++v+++++eHn Kaladp0088s0008.1.p 23 VYKEYARISGYQVRLATTQKVTRSDCIKLQYLFCNRQGLHKFRAFNhlegdVSCGYKRRFSTRTGCKARLVLRLIRDSSYVVSDFVEEHN 112 6**********************9999999*****9999988887777888******************************* PP FAR1 87 Hela 90 H l+ Kaladp0088s0008.1.p 113 HCLT 116 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-14	23	116	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-28	225	318	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.58	502	540	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MCDEKLKPYK EKIFNSLNEG ISVYKEYARI SGYQVRLATT QKVTRSDCIK LQYLFCNRQG 60 LHKFRAFNHL EGDVSCGYKR RFSTRTGCKA RLVLRLIRDS SYVVSDFVEE HNHCLTSPEY 120 QQFLKSNRSL NFAQENFIMD CGNIKIGAKK SHKILKEISG GYANVGAQNF VGNSDAQIIL 180 DRLKSKQDLC PGFAFDYFVG TDGALQRCFW ADSIAKNNFE AFGDCVAFDA TYRTNKYNLV 240 FIPFTGVDNH KCCITLGAGL LAKENVESYE WLMESFRKIM SRGPRIWVTD QDPSMKIAIK 300 NIFPNSIHRL CMWHITKKFT EKIGNILCRD KKFLDNLDGI VCNAHYEPDV FESEWARMIE 360 DYKLQDNKWL SDMYEMRANW IPAFFRDIPM GGLLRTTSCS ECENSFFNCF FHPGMSLTEF 420 FMAFDSAMDA QRHRKDQMDH ETTSSEPIIK TSLHVEKQAA EVYTRTIFYD VQHEIIESCL 480 HCHVCSISGD DESKIYGITN EDSIHLVHHI GSNVAECICK NFQRIGLACR HIFLALKSSG 540 VTEIPDYFIS KRWTKKAVHK LDSSSFGDIA ETSASRNGSK ELWIELNAAA KSVGCHKQKI 600 DELIETLRTF RDKHSGRIVY MSKQDLFESI IGSPRPTQII VQTPQQSRNK GCGKRLMSER 660 DKIVEK*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MCDEKLKPYK EKIFNSLNEG ISVYKEYARI SGYQVRLATT QKVTRSDCIK LQYLFCNRQG  60
LHKFRAFNHL EGDVSCGYKR RFSTRTGCKA RLVLRLIRDS SYVVSDFVEE HNHCLTSPEY  120
QQFLKSNRSL NFAQENFIMD CGNIKIGAKK SHKILKEISG GYANVGAQNF VGNSDAQIIL  180
DRLKSKQDLC PGFAFDYFVG TDGALQRCFW ADSIAKNNFE AFGDCVAFDA TYRTNKYNLV  240
FIPFTGVDNH KCCITLGAGL LAKENVESYE WLMESFRKIM SRGPRIWVTD QDPSMKIAIK  300
NIFPNSIHRL CMWHITKKFT EKIGNILCRD KKFLDNLDGI VCNAHYEPDV FESEWARMIE  360
DYKLQDNKWL SDMYEMRANW IPAFFRDIPM GGLLRTTSCS ECENSFFNCF FHPGMSLTEF  420
FMAFDSAMDA QRHRKDQMDH ETTSSEPIIK TSLHVEKQAA EVYTRTIFYD VQHEIIESCL  480
HCHVCSISGD DESKIYGITN EDSIHLVHHI GSNVAECICK NFQRIGLACR HIFLALKSSG  540
VTEIPDYFIS KRWTKKAVHK LDSSSFGDIA ETSASRNGSK ELWIELNAAA KSVGCHKQKI  600
DELIETLRTF RDKHSGRIVY MSKQDLFESI IGSPRPTQII VQTPQQSRNK GCGKRLMSER  660
DKIVEK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-89	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0088s0008.1.p