PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0022.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 120aa    MW: 13236.6 Da    PI: 10.2773
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.23e-155689132
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                         C++Cg  +  Tp++R gp g+k+LCnaCGly++ 
  Kaladp0088s0022.1.p 56 CTHCGIGSnsTPMMRIGPAGPKSLCNACGLYWKN 89
                         ****865556**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510179.475131IPR010402CCT domain
PfamPF062033.0E-10231IPR010402CCT domain
SuperFamilySSF577163.18E-95691No hitNo description
CDDcd002022.51E-85688No hitNo description
Gene3DG3DSA:3.30.50.101.6E-125689IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.6E-135689IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-45699IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MKRCFEKKIR YHVRQKVALR LPRSKGQFFS EKTVDCGGNN TKDSGPSNSL RYLNGCTHCG  60
IGSNSTPMMR IGPAGPKSLC NACGLYWKNT VLSLLFPFPT ISVLKLLSHC LLSVHCLFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021642399.15e-31GATA transcription factor 25-like isoform X1
SwissprotQ9LRH62e-28GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2K3NY221e-28A0A2K3NY22_TRIPR; GATA transcription factor 25-like protein
TrEMBLV4TBN39e-29V4TBN3_9ROSI; Uncharacterized protein
STRINGXP_004490456.11e-28(Cicer arietinum)
STRINGcassava4.1_013436m7e-29(Manihot esculenta)
STRINGLus100328399e-29(Linum usitatissimum)
STRINGXP_006433799.11e-28(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.29e-31GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]