PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0022.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 111aa    MW: 11947.6 Da    PI: 9.7815
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-154985135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg  +  Tp++R gp g+k+LCnaCGly++ +g+
  Kaladp0088s0022.2.p 49 CTHCGIGSnsTPMMRIGPAGPKSLCNACGLYWKNTGR 85
                         ****865556***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003201.3E-134985IPR000679Zinc finger, GATA-type
CDDcd002023.30E-114994No hitNo description
SMARTSM004012.1E-94996IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-154990IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.66E-114994No hitNo description
PROSITE profilePS501149.3024999IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MFVKKWLSVG NCRLPRSKGQ FFSEKTVDCG GNNTKDSGPS NSLRYLNGCT HCGIGSNSTP  60
MMRIGPAGPK SLCNACGLYW KNTGRLRDLS SRSKASSHDL PEVGHFLHEG *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021743750.12e-23GATA transcription factor 24-like
SwissprotQ9LRH65e-21GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A392LZZ52e-22A0A392LZZ5_9FABA; GATA transcription factor 25-like
TrEMBLA0A445H7H92e-21A0A445H7H9_GLYSO; GATA transcription factor 25
TrEMBLI1MB132e-21I1MB13_SOYBN; Uncharacterized protein
STRINGGLYMA14G36150.13e-22(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-23GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]