PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0089s0084.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 160aa MW: 17405.3 Da PI: 7.6501

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0089s0084.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Kaladp0089s0084.1.p 14 YECVFCKRGFTTAQALGGHMNIH 36 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.2E-4	12	38	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.55E-6	12	40	No hit	No description
PROSITE profile	PS50157	10.99	14	41	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MDVTSYDLGI GRSYECVFCK RGFTTAQALG GHMNIHRKDR AKPRLNHPSS SSLNHELSNN 60 LGFSSQVDFH QFLTPTNSSS SSNSRFHTDH AATQIGSLSA CCKENWCSAA SLGLRIGVPS 120 SHVVEEIGKR RSSSQGGFDI HHQAVEDLDL ELRLGHLNP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1R3KQL2	3e-24	A0A1R3KQL2_9ROSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	3e-13	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0089s0084.1.p