PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0090s0043.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 127aa    MW: 13595.1 Da    PI: 9.8666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0090s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-054264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C +C+++F ++  L  H++ H
  Kaladp0090s0043.1.p 42 FTCLYCNRRFCNSQALGGHQNAH 64
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-54169No hitNo description
PROSITE profilePS5015711.1154269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MADQKNFLKQ AASARQHPSP APAFFFPNTH YYPPHPAAQA GFTCLYCNRR FCNSQALGGH  60
QNAHKRERAA ARRRPAPGGQ PIHNNNNAAA AAAWLYPAAT LLHYNSISSS GGGAGADEEI  120
DLTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099006.12e-16zinc finger protein 4
TrEMBLA0A4D8Y9V11e-14A0A4D8Y9V1_SALSN; Uncharacterized protein
STRINGMigut.F00027.1.p1e-13(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-10C2H2 family protein