PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0090s0074.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 473aa    MW: 52322.2 Da    PI: 5.983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0090s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11285331354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e+Er RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Kaladp0090s0074.1.p 285 VNHVEAERMRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVLYINEL 331
                          689************************6.....4***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-1790181IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.266282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16283351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-12285331No hitNo description
PfamPF000109.8E-9285331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-15286350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEEQEELVIS NTRQPPSCSS TCLSHDPRLN TNNLHLFTLH QKLQMLLEVE TPYSMTCWSH  60
AIFWQLTTTA AARPYLAWGD GHIRTSSQYN NSTMQKCQWF YMTSVGKSFT SGDGTVVTQA  120
ASGSQPYLWL LLNGNTYNCT RANQARINGI QTFVCVPVDG GVLELASCHA VPDSWLLLRQ  180
VIEPLFDSHP NHDRPFFSMP AGCFDDVSFS DIPIISGEKS DDPARDDDDN LDLSRVAKTE  240
MMALAHASSD LDCLFMDSSS SSRKLNQKRR AGRKPAMMQK DAQPVNHVEA ERMRREKLNH  300
RFYALRAVVP NVSRMDKASL LSDAVLYINE LCCKVAHLES SLSKLQASPS SLNNNNNNNS  360
SSSDTTQMMA KQLLPSSSSS CLSLASDDSH NVEVEVRVVG GDAMIRVISE DVDYPAARLM  420
CALREMGLVI HHASVSCVNE LVIQDVLVRV PPGACNEEAY LKSVLIKILE TP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-23283346566Transcription factor MYC2
5gnj_B5e-23283346566Transcription factor MYC2
5gnj_E5e-23283346566Transcription factor MYC2
5gnj_F5e-23283346566Transcription factor MYC2
5gnj_G5e-23283346566Transcription factor MYC2
5gnj_I5e-23283346566Transcription factor MYC2
5gnj_M5e-23283346566Transcription factor MYC2
5gnj_N5e-23283346566Transcription factor MYC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-40bHLH family protein