PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0091s0034.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 333aa    MW: 36506.9 Da    PI: 6.7916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0091s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.7e-14118169155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+e++k+L+
  Kaladp0091s0034.1.p 118 QRMTHIVVERNRRKQMNEHLSVLRSLMPQS---YAQRGDQASIVGGAIEFVKELE 169
                          79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.35E-13116173No hitNo description
SuperFamilySSF474595.5E-17116187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-15118184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAMEALHSND FLNFLIYDTL SATPVCANSS FVHHVAASSS SSDTANTLAY LDHQMNNNEP  60
PEENNNDVAT HVPGCGGSSS GGNKKSNLGV QQGGGGNNKK RRRKRARVCK NKEEAETQRM  120
THIVVERNRR KQMNEHLSVL RSLMPQSYAQ RGDQASIVGG AIEFVKELEH IVQSLESQKC  180
QIQSDSSHQL VLSDATGTPS TPFSQFFTYP QYTWFQSPNK YSASSKASVA DIEVTLIETH  240
ANIRILTKRS PRQPYKLIAS FHAVHLTILH LNITTMDSLV LYSVSAKVEE GCPLITVDDI  300
AGAVHHMLRI IEREEEQEED ATAVAAAAAL CS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104NKKRRRKR
298103KKRRRK
398104KKRRRKR
4118129RMTHIVVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923169.11e-121transcription factor bHLH71-like
SwissprotQ9SK911e-71BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A2I4DNU51e-118A0A2I4DNU5_JUGRE; transcription factor bHLH71-like
TrEMBLA0A2N9GA131e-118A0A2N9GA13_FAGSY; Uncharacterized protein
STRINGcassava4.1_012613m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-69bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]