PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0091s0087.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 947aa MW: 110075 Da PI: 8.1348

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0091s0087.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	246	332	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++ GFsvr+ k+ + + ++ +++++C k+g+++ + ++ + +++etrtgC+a+++ + + +g+w+v+ l++eHnH+la Kaladp0091s0087.1.p 246 LYCDYAHSFGFSVRRGKQAYYRGTKILCWKHYYCAKQGFKNGQPSD--VVSYHKPETRTGCEAMVQFNIDGNGNWKVKFLSEEHNHQLA 332 7***************************************9988..7888999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-18	246	332	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-35	454	548	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	720	756	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	726	755	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-4	731	758	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence Send to blast
MMSEHEILQK ATEEESEKQD EANCHDKVIF DSNDEEVNIS ELGRELKGKV VISEKEAYDL 60 YCDYAHSFGF SDSRMDSRLM LSVIINLKQK RDAEPWFKFN IDGNGNWKVK FLSEEHNHQL 120 ARHWERHFLR SARNVSKDKG EVIEQMSSLP QNTLERTITI VAKKAGIGFL CRQFKTAKSE 180 INFSRNMMSE HEILEKATEE ESDKQDEVNC HDKVIFDSND EEVNVSELGR ELKGKVVISE 240 KEAYDLYCDY AHSFGFSVRR GKQAYYRGTK ILCWKHYYCA KQGFKNGQPS DVVSYHKPET 300 RTGCEAMVQF NIDGNGNWKV KFLSEEHNHQ LARHWERHIL RSARNVSKDK GEVIEQMVNS 360 GIRPIDAYSF MSKVAGGAQT LGFLQKDCYN HLSMKRMSVI ENGDATTLVN HFRKRSISEG 420 LFYWDVELDE ADRMCNFYWR DARSKEDYNC FGDVIVFDTT YRTNKYDLIC APFIGINHHM 480 QNVVFGCAFT QDETTKTFIW LFETFLKSMD MKHPKTIFTD GDQAMAKAIK EVFPDTRHRL 540 CLWHISKNAP SHLGNLKSDR VFYGLWNKCI MVTLHPEIRE HKWLNLMFKI RHKWSVGFNR 600 DTFGAGVRSS QRSESTNRVL NVFADCTTNL TNFNLAFEDM VERWRQNEAE EDFHCCQTEP 660 TRLIKNSQIL IQAARHTKGI YKFQEEYLDG IGATTCTNII CEGSLYKFEI TLQSVGMKLH 720 TVLFNTDSME ISCSCKRFET TGWLCSHSMK ALTMKNMTMI PDKYIMKRWT KDARKISHFH 780 HFPVHPKADF EPWTLYCNRA MRYAYNLVMK SKSNDQAREI VMCGLDKIEA DLLDLVNGAK 840 STREPLKKIT SLDDKENQEI SILDPIRVKC KGGSKKRLKG HFEKSKRKRS QQMEITNHII 900 FNYQPSSLTK FAKSVVQLKA AEEGLRLELV KHQICEKPDL KFEKKG*

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence Send to blast

MMSEHEILQK ATEEESEKQD EANCHDKVIF DSNDEEVNIS ELGRELKGKV VISEKEAYDL  60
YCDYAHSFGF SDSRMDSRLM LSVIINLKQK RDAEPWFKFN IDGNGNWKVK FLSEEHNHQL  120
ARHWERHFLR SARNVSKDKG EVIEQMSSLP QNTLERTITI VAKKAGIGFL CRQFKTAKSE  180
INFSRNMMSE HEILEKATEE ESDKQDEVNC HDKVIFDSND EEVNVSELGR ELKGKVVISE  240
KEAYDLYCDY AHSFGFSVRR GKQAYYRGTK ILCWKHYYCA KQGFKNGQPS DVVSYHKPET  300
RTGCEAMVQF NIDGNGNWKV KFLSEEHNHQ LARHWERHIL RSARNVSKDK GEVIEQMVNS  360
GIRPIDAYSF MSKVAGGAQT LGFLQKDCYN HLSMKRMSVI ENGDATTLVN HFRKRSISEG  420
LFYWDVELDE ADRMCNFYWR DARSKEDYNC FGDVIVFDTT YRTNKYDLIC APFIGINHHM  480
QNVVFGCAFT QDETTKTFIW LFETFLKSMD MKHPKTIFTD GDQAMAKAIK EVFPDTRHRL  540
CLWHISKNAP SHLGNLKSDR VFYGLWNKCI MVTLHPEIRE HKWLNLMFKI RHKWSVGFNR  600
DTFGAGVRSS QRSESTNRVL NVFADCTTNL TNFNLAFEDM VERWRQNEAE EDFHCCQTEP  660
TRLIKNSQIL IQAARHTKGI YKFQEEYLDG IGATTCTNII CEGSLYKFEI TLQSVGMKLH  720
TVLFNTDSME ISCSCKRFET TGWLCSHSMK ALTMKNMTMI PDKYIMKRWT KDARKISHFH  780
HFPVHPKADF EPWTLYCNRA MRYAYNLVMK SKSNDQAREI VMCGLDKIEA DLLDLVNGAK  840
STREPLKKIT SLDDKENQEI SILDPIRVKC KGGSKKRLKG HFEKSKRKRS QQMEITNHII  900
FNYQPSSLTK FAKSVVQLKA AEEGLRLELV KHQICEKPDL KFEKKG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	874	888	KKRLKGHFEKSKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787110.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_026659730.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2H3XQ20	0.0	A0A2H3XQ20_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A3Q0I223	0.0	A0A3Q0I223_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_008787110.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-94	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0091s0087.1.p