PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0091s0098.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 308aa    MW: 33528.9 Da    PI: 6.3116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0091s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-20161211255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f+ta +Aaka+++a+ kl+g
  Kaladp0091s0098.1.p 161 HYRGVRRRP-WGKFAAEIRDPYKRG--ARVWLGTFDTAIDAAKAYDRAAFKLRG 211
                          7********.**********99987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-31160220IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22161221IPR016177DNA-binding domain
CDDcd000181.04E-29161219No hitNo description
PROSITE profilePS5103224.355161219IPR001471AP2/ERF domain
SMARTSM003807.0E-36161225IPR001471AP2/ERF domain
PfamPF008472.3E-13161211IPR001471AP2/ERF domain
PRINTSPR003671.7E-13162173IPR001471AP2/ERF domain
PRINTSPR003671.7E-13201221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MATPSEVSTL EQIKQHLFGG LLSPVNLKSF GSGSGSGSDS SESVVTTSTD SPVSFSNYGA  60
FSKLESCNSF EFDQLPSEFF SFETKFVATG FDFAPEAEVI DLIETSMKKP QIRASKPCRK  120
PSLNISLPDK TEWLDLTQPR AAPPAAVASK PEKAVAGDDR HYRGVRRRPW GKFAAEIRDP  180
YKRGARVWLG TFDTAIDAAK AYDRAAFKLR GSKAILNFPL EIAASCSAGD AVGVVDCGRK  240
RRSRDEEVEA EVKKVKAEEE VAKPLTPTSW TAFWDFDETE MRGIFNVPPL SPLSPHPALG  300
LAQLMVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30160222466ATERF1
3gcc_A3e-30160222466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070058.12e-70ethylene-responsive transcription factor 5
TrEMBLA0A067L5Z55e-69A0A067L5Z5_JATCU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-39ethylene responsive element binding factor 5