PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0091s0104.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 244aa    MW: 27278.7 Da    PI: 6.2534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0091s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.33.6e-10177243774
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT- CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangL 74 
                          +s v+k+++lv+p +f+e++     e++++tl+  +gr W+vk++  + s+   + ++ Wk+ + +++L
  Kaladp0091s0104.1.p 177 KSGVNKKCQLVFPLSFTEAYFTF--ENRDITLQAGDGRIWSVKYSLARESSVlLMVGSSWKQLAIDHDL 243
                          6889****************544..4458***************9977766669999*******99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-8157243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.433171243IPR003340B3 DNA binding domain
CDDcd100175.05E-11176243No hitNo description
PfamPF023622.5E-8176243IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-8177243IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRFGWEEGWS SLLRSSVDVT YGHYLVFDYD GKRAVFHVVA IGMSAIEIEH PAVGGIDDND  60
QDHGSGQLKR PRIELENDAD LGLRRSDKTQ APFFDLSRKS ARASQSSNLE GEKMRGNSPI  120
ASGDELVETD HTIVKIGRRC RNLTNDQTEK AILRTKAFQS EESICIIALQ PSYMNLKSGV  180
NKKCQLVFPL SFTEAYFTFE NRDITLQAGD GRIWSVKYSL ARESSVLLMV GSSWKQLAID  240
HDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-