PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0092s0109.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 358aa    MW: 39101.2 Da    PI: 4.4813
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0092s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.12.2e-15251288441
                  TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           +C+Ckks+Clk+YC+Cfa g +C+ +C C +C Nk++
  Kaladp0092s0109.1.p 251 IRCKCKKSECLKLYCDCFALGMFCGTSCACINCWNKSD 288
                          68*********************************986 PP
2TCR39.11.5e-12314351239
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          +++gCnCk+skC+k+YCeC++a++ C + C+C++C N 
  Kaladp0092s0109.1.p 314 KTRGCNCKRSKCVKNYCECYQANAGCCQGCHCHGCTNP 351
                          689*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-13248289IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.337249353IPR005172CRC domain
PfamPF036388.9E-12252286IPR005172CRC domain
SMARTSM011144.1E-11313354IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-9316350IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLTKVSSENA AAETDENADD PILEERNGVD GDELTKERGE SLKDAEQLFE ADFPGFTIDD  60
DFPGWSSTSN TDQVGTTDVV SSTNSWDYNL PGVSLCQSGL IGGSMSDNLY AQGMMSQQYE  120
MEDSGSGYQQ QALNISLCEP GHFDSDLPRS GNFSRNLHFL LPSTSPYGVQ LPNTNFLNNI  180
NSAALETITP NRDPPGRLSV QLPNIYVDVV VGQTSALATN ITPAELLLSP SSAYNNHRRS  240
FSSSNINVEE IRCKCKKSEC LKLYCDCFAL GMFCGTSCAC INCWNKSDYE DSIQTARDQI  300
QVRNPHAFES RVNKTRGCNC KRSKCVKNYC ECYQANAGCC QGCHCHGCTN PYGSRPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1625335014120Protein lin-54 homolog
5fd3_B8e-1625335014120Protein lin-54 homolog
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.17e-29Tesmin/TSO1-like CXC domain-containing protein