PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0093s0005.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27435.2 Da    PI: 9.401
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0093s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g++KKA+E+SvLC+aeva+i++s++gkl++y+s
  Kaladp0093s0005.1.p  9 KRIENKINRQVTFSKRRSGLMKKAHEISVLCEAEVALIVYSTKGKLFDYAS 59
                         79***********************************************86 PP
2K-box966.1e-32831749100
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          ++ + + s+++++akL+++ie Lqr+qR+l+GedL++Lsl+eLq+Le+qLe++lk+iR kKn+l+ ++i el kk k++qe+n+ L kk+
  Kaladp0093s0005.1.p  83 TDLTSNGSWTHQHAKLQNRIEVLQRNQRNLMGEDLDPLSLRELQNLEHQLENALKHIRLKKNQLMNQSIAELHKKDKAMQEQNNLLGKKI 172
                          44556689*********************************************************************************9 PP

                K-box  99 ee 100
                          +e
  Kaladp0093s0005.1.p 173 KE 174
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.399161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.29E-41279No hitNo description
SuperFamilySSF554556.93E-33288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-2587172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.93288178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLMK KAHEISVLCE AEVALIVYST KGKLFDYASD  60
SSMERILERY ERYSTSDQQL LSTDLTSNGS WTHQHAKLQN RIEVLQRNQR NLMGEDLDPL  120
SLRELQNLEH QLENALKHIR LKKNQLMNQS IAELHKKDKA MQEQNNLLGK KIKEREKALA  180
EHGQLDHQSQ DPSPPPTQTL EPIMRCVDIN RDINQGEGST DQSHPSTALP PWMLGGPTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-23185184Myocyte-specific enhancer factor 2B
1tqe_Q5e-23185184Myocyte-specific enhancer factor 2B
1tqe_R5e-23185184Myocyte-specific enhancer factor 2B
1tqe_S5e-23185184Myocyte-specific enhancer factor 2B
6byy_A4e-23185184MEF2 CHIMERA
6byy_B4e-23185184MEF2 CHIMERA
6byy_C4e-23185184MEF2 CHIMERA
6byy_D4e-23185184MEF2 CHIMERA
6c9l_A5e-23185184Myocyte-specific enhancer factor 2B
6c9l_B5e-23185184Myocyte-specific enhancer factor 2B
6c9l_C5e-23185184Myocyte-specific enhancer factor 2B
6c9l_D5e-23185184Myocyte-specific enhancer factor 2B
6c9l_E5e-23185184Myocyte-specific enhancer factor 2B
6c9l_F5e-23185184Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625854.11e-103PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424293e-97AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S3YGF61e-102A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009625854.11e-103(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-91AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]