PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0093s0085.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 459aa    MW: 50008 Da    PI: 7.7754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0093s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.22e-15286331555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Kaladp0093s0085.1.p 286 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 331
                          9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-19279343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.727281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-13286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-18286340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-16286334No hitNo description
SMARTSM003532.3E-17287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSQCVPSWDN NPHNDTYSHT LHPHLPPAPA KQLVHSRNLD SGIVPSSAPE VPAMLDYEVA  60
ELTWENGQLA LHGLGQPRTS GAWQDKHQPG SGTLESIVNQ ATCFFNPNDK SSFDHRAPTA  120
SAAMVMDALV PLCSNTNNNN CNCNNNNNNG NNPDEDSNAR GTVGHTHVGS CSAGMKRTRQ  180
GVRQVPVVGQ DWSARSEYSA NSSRQQQVTV DTCTERDQGT TAFTSTSVWS AENTSSGMPC  240
TRLTGDDHDS ICHSRSIMKN ERGSGENKKQ KASNNSAKRS RAADIHNQSE RKRRDKINQR  300
MKTLQKLVPN SNKTDKASML DEVIDYLKQL QAQVNMMNRM NMPQMAMMPM ALNQQAALQM  360
TMMAQMGMGG MLDMNTAAAM AAGRASMQPI LHPSAAAAAF MPMPPASWDA AAQAMMSDPM  420
SAFLACQQSQ PMTMDAYRMM ASLYQHMQQA QQAPNSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294ERKRRD
2290295RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017451.11e-109PREDICTED: transcription factor UNE10-like
TrEMBLU5GLG21e-106U5GLG2_POPTR; BHLH family protein
STRINGPOPTR_0002s14430.11e-107(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-62bHLH family protein