PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0093s0085.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 336aa    MW: 36694.4 Da    PI: 8.943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0093s0085.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15163208555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  Kaladp0093s0085.2.p 163 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIDYLKQLQ 208
                          9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-19156220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.727158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-18163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-13163208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-15163211No hitNo description
SMARTSM003532.3E-17164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVMDALVPLC SNTNNNNCNC NNNNNNGNNP DEDSNARGTV GHTHVGSCSA GMKRTRQGVR  60
QVPVVGQDWS ARSEYSANSS RQQQVTVDTC TERDQGTTAF TSTSVWSAEN TSSGMPCTRL  120
TGDDHDSICH SRSIMKNERG SGENKKQKAS NNSAKRSRAA DIHNQSERKR RDKINQRMKT  180
LQKLVPNSNK TDKASMLDEV IDYLKQLQAQ VNMMNRMNMP QMAMMPMALN QQAALQMTMM  240
AQMGMGGMLD MNTAAAMAAG RASMQPILHP SAAAAAFMPM PPASWDAAAQ AMMSDPMSAF  300
LACQQSQPMT MDAYRMMASL YQHMQQAQQA PNSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERKRRD
2167172RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017451.11e-82PREDICTED: transcription factor UNE10-like
TrEMBLA0A2G9GTZ36e-81A0A2G9GTZ3_9LAMI; Transcriptional repressors of the hairy/E(Spl) family (Contains HLH)
STRINGPOPTR_0002s14430.11e-80(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-37bHLH family protein