PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0093s0097.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 184aa MW: 21204.3 Da PI: 6.5127

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0093s0097.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	226	1.8e-69	2	182	192	373
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 e+L+v++gEala n+ lqlh+++desv+++++rd +L++vksl+Pkvv+++eqe+++n+++F++rfle+l+yysa+f+s+++++pr+s+e Kaladp0093s0097.1.p 2 EMLDVRSGEALAMNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLIEQESNTNTTPFFNRFLETLDYYSAMFESIDVTMPRDSKE 91 89************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ri+vE ++l+r+ vn++aceg+er+erhe l+kW++r+++aGF++ pls+++++ + +ll+ ++ + y++ee++g+++lgWk+r+Lvs+S Kaladp0093s0097.1.p 92 RINVEMHCLARDMVNIIACEGKERVERHELLGKWKSRFTMAGFRQFPLSTYVNSVIGSLLKCYS-EHYTLEERDGAMLLGWKRRNLVSAS 180 ********************************************************9988.66******************* PP GRAS 372 aW 373 aW Kaladp0093s0097.1.p 181 AW 182 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.268	1	164	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-67	2	182	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEMLDVRSGE ALAMNFPLQL HHTPDESVDV NNPRDGLLRM VKSLNPKVVT LIEQESNTNT 60 TPFFNRFLET LDYYSAMFES IDVTMPRDSK ERINVEMHCL ARDMVNIIAC EGKERVERHE 120 LLGKWKSRFT MAGFRQFPLS TYVNSVIGSL LKCYSEHYTL EERDGAMLLG WKRRNLVSAS 180 AWH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-28	6	183	197	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898184.1	1e-118	chitin-inducible gibberellin-responsive protein 1-like
Swissprot	Q69VG1	1e-105	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A2P6QBM1	1e-114	A0A2P6QBM1_ROSCH; Putative transcription factor GRAS family
TrEMBL	A0A2R6QDF0	1e-114	A0A2R6QDF0_ACTCH; Chitin-inducible gibberellin-responsive protein
TrEMBL	A0A498K7Y7	1e-114	A0A498K7Y7_MALDO; Uncharacterized protein
STRING	XP_008365835.1	1e-115	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	5e-92	GRAS family protein

Link Out ? help Back to Top
Phytozome	Kaladp0093s0097.1.p

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]