PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0093s0154.14.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 185aa MW: 20303.1 Da PI: 8.9683

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0093s0154.14.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	227.2	4.4e-70	4	172	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekee 90 se+vCyv+CnfCnt+l+vsvP ts++++vtvrCGhC++llsvn+ q + +h+ ++ +++ l ++ +++ n++s ++++ Kaladp0093s0154.14.p 4 GSERVCYVHCNFCNTVLVVSVPCTSMLNIVTVRCGHCANLLSVNMGALLQPSSI-QHFPQKQQQTgaegALMTNATNNLNYSSGSSSSS 91 589*************************************999887755444.4444333333111233333333333333333333 PP YABBY 91 sastsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s+s+ ++ kl ++e+++ pr pp +rP ekrqrvPsaynrfikeeiqrikasnP+ishreafsaaaknWahfP+ihfg Kaladp0093s0154.14.p 92 SPSKCNPD-KLsgscLSSENNQPPRLPP-VRPMEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFG 172 33333333.3355544556677788888.9**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-71	5	173	IPR006780	YABBY protein
CDD	cd01390	1.26E-5	118	163	No hit	No description
SuperFamily	SSF47095	1.31E-7	119	167	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-5	126	181	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEVGSERVCY VHCNFCNTVL VVSVPCTSML NIVTVRCGHC ANLLSVNMGA LLQPSSIQHF 60 PQKQQQTGAE GALMTNATNN LNYSSGSSSS SSPSKCNPDK LSGSCLSSEN NQPPRLPPVR 120 PMEKRQRVPS AYNRFIKEEI QRIKASNPEI SHREAFSAAA KNWAHFPHIH FGMKKAKFLD 180 QDIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022756051.1	2e-73	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-62	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A061GUT1	5e-71	A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOY33226	8e-72	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-63	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kaladp0093s0154.14.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]