PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0093s0154.4.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 149aa MW: 16347.6 Da PI: 9.7

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0093s0154.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	168.1	6.1e-52	2	137	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprv 112 vsvP ts++++vtvrCGhC++llsvn+ q ++ +h+ ++ +++ +e +++++ + ++ s+s+s +s + Kaladp0093s0154.4.p 2 EVSVPCTSMLNIVTVRCGHCANLLSVNMGALLQP-SSIQHFPQQKQQQTGAEGALMTNATNNLNYSSGSSSSSSPS--------KC---N 79 69*********************998766554.34444333333222222222222222222222222222222........11...2 PP YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 p+ ekrqrvPsaynrfikeeiqrikasnP+ishreafsaaaknWahfP+ihfg+ Kaladp0093s0154.4.p 80 PDKLSAMEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGM 137 33455679**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.0E-56	2	137	IPR006780	YABBY protein
SuperFamily	SSF47095	8.9E-8	77	131	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.4E-5	87	131	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEVSVPCTSM LNIVTVRCGH CANLLSVNMG ALLQPSSIQH FPQQKQQQTG AEGALMTNAT 60 NNLNYSSGSS SSSSPSKCNP DKLSAMEKRQ RVPSAYNRFI KEEIQRIKAS NPEISHREAF 120 SAAAKNWAHF PHIHFGMKKA KFLDQDIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611999.1	6e-54	PREDICTED: putative axial regulator YABBY 2 isoform X3
Refseq	XP_011088989.1	5e-54	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	5e-54	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-46	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1J6KYN5	8e-52	A0A1J6KYN5_NICAT; Putative axial regulator yabby 2
STRING	Migut.D02379.1.p	2e-52	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-47	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kaladp0093s0154.4.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]