PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0094s0004.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 335aa MW: 35771.5 Da PI: 7.7878

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0094s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.1e-39	25	84	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+ k+ Kaladp0094s0004.1.p 25 QQSLKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSSKRA 84 7899***************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	20	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.366	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MQDIHLIGAG RVYADRRLRL NHLEQQSLKC PRCDSLNTKF CYYNNYNLSQ PRHFCKSCRR 60 YWTKGGVLRN VPVGGGCRKS SKRASSAKSG KPTAADDSKP RKANGSNSSS ESSSLTGATA 120 AAATDAPVAI AAADVAAVPG ASPSTPASPD AVSASSLSAM FGFGGTLANT KFLFPEIGNP 180 NFSSDPMTGS NCGGGGGVTD IGNFTGLMTS SSNNDPTTVS MPTSHDAVSP FRMNLQDEIP 240 PPPQQQQYDH PMEQWRLSSV EAKLQYMADA ARGYVDPTVQ IDRACDGGSE PLNWQQQQQQ 300 NVFGLTSAVD HSYWSQAHWS NADNPSPHHH LYLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	6e-57	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-30	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Kaladp0094s0004.1.p