PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0094s0011.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27259 Da    PI: 9.3488
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0094s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl++y++
  Kaladp0094s0011.1.p  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFDYAT 59
                         79***********************************************86 PP
2K-box99.93.5e-33811747100
                K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            ++++ + s++ e+a+Lk++ie L+++qRh++GedL+sL lkeLq+Le+qL+++lk+iR+kK++l++e+i+elqkk k+l+e+n++L k
  Kaladp0094s0011.1.p  81 IPTDTESNGSWHLEHARLKARIEALEQKQRHYMGEDLDSLILKELQNLENQLDSALKHIRAKKSQLMFESISELQKKDKQLHEQNTSLAK 170
                          4466777899******************************************************************************** PP

                K-box  97 klee 100
                          +++e
  Kaladp0094s0011.1.p 171 QMKE 174
                          9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.338161IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002653.50E-40279No hitNo description
SuperFamilySSF554551.31E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014865.6E-2886172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.6888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVQMKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFDYATD  60
SCMDRILERH ERYSSAEKQL IPTDTESNGS WHLEHARLKA RIEALEQKQR HYMGEDLDSL  120
ILKELQNLEN QLDSALKHIR AKKSQLMFES ISELQKKDKQ LHEQNTSLAK QMKERENTQG  180
MDQQSHIQPP LEASTGIGGG NYIYQGARDH GGTASSALHL TTTTTTLLPQ WMLMSRLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-22184183Myocyte-specific enhancer factor 2B
1tqe_Q1e-22184183Myocyte-specific enhancer factor 2B
1tqe_R1e-22184183Myocyte-specific enhancer factor 2B
1tqe_S1e-22184183Myocyte-specific enhancer factor 2B
6c9l_A1e-22184183Myocyte-specific enhancer factor 2B
6c9l_B1e-22184183Myocyte-specific enhancer factor 2B
6c9l_C1e-22184183Myocyte-specific enhancer factor 2B
6c9l_D1e-22184183Myocyte-specific enhancer factor 2B
6c9l_E1e-22184183Myocyte-specific enhancer factor 2B
6c9l_F1e-22184183Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393257.11e-103truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ424291e-100AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ283Q11e-101Q283Q1_MALDO; MdMads2.1 protein
STRINGXP_008393256.11e-102(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.18e-93AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]