PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0094s0109.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 226aa    MW: 23455.7 Da    PI: 9.2142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0094s0109.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.1e-083054226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k +lC+ f     Ck+Gd+C+FaHg
  Kaladp0094s0109.2.p 30 KSRLCNKFNSAEGCKFGDKCHFAHG 54
                         6799******99************9 PP
2zf-CCCH38.91.4e-12192216126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt+lC  fa+ G C++GdrC+FaHg
  Kaladp0094s0109.2.p 192 YKTKLCEKFAK-GSCSFGDRCNFAHG 216
                          9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.19E-72759IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0562856IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-122959IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-63054IPR000571Zinc finger, CCCH-type
SMARTSM003560.023055IPR000571Zinc finger, CCCH-type
SMARTSM003222.6E-1297167IPR004087K Homology domain
SuperFamilySSF547911.07E-1497168IPR004088K Homology domain, type 1
PROSITE profilePS5008413.73398162IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-1598166IPR004088K Homology domain, type 1
PfamPF000131.4E-11100164IPR004088K Homology domain, type 1
CDDcd001055.76E-14102162No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-17187223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-9190221IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.971191218IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSNTGPAAPP STRSMVGPPS MSNASLPTVK SRLCNKFNSA EGCKFGDKCH FAHGDWELGK  60
PINLSFDDPQ GVGRSSGRMG GRMMEPPVSA AAACFGATAT TKVSVDASLA SAIIGKGGVN  120
SKQICRQTGV KLVIREHESD LNLRNVELEG TFEQISQASA MVRELIGNIS AMAGPPKSHG  180
GPGQGTPPSS NYKTKLCEKF AKGSCSFGDR CNFAHGAAEL RKPGL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860219.11e-109PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-75C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4HVP91e-108A0A2I4HVP9_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGVIT_08s0007g06400.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-56C3H family protein