PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0409.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 141aa    MW: 14856.9 Da    PI: 6.4905
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0409.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.13.3e-151854135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg+ +  Tp +Rrgp g++tLCnaCGl+ + kg+
  Kaladp0095s0409.1.p 18 CQHCGVGEnsTPAMRRGPAGPRTLCNACGLMLANKGM 54
                         *****99889*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-81265IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.7481260IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-111663No hitNo description
Gene3DG3DSA:3.30.50.108.3E-151659IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.52E-141761No hitNo description
PROSITE patternPS0034401845IPR000679Zinc finger, GATA-type
PfamPF003209.1E-131853IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MVTKGDIIPQ PEATLRSCQH CGVGENSTPA MRRGPAGPRT LCNACGLMLA NKGMLRDLSK  60
GGRNASFSQT ASGMPFDVKI SFANKGHIST NHDQHIFAEA APIVNEGNDV SFIYGDEEVS  120
ICSILEPGVA LPSYNMPMCS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664424.13e-39PREDICTED: GATA transcription factor 24 isoform X1
TrEMBLA0A438G0423e-37A0A438G042_VITVI; GATA transcription factor 24
TrEMBLF6H1476e-38F6H147_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07730.t011e-38(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-23ZIM-LIKE 2