PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0095s0409.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 111aa MW: 11734.4 Da PI: 6.7574

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0095s0409.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	32	1.7e-10	1	24	12	35
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 +Rrgp g++tLCnaCGl+ + kg+ Kaladp0095s0409.2.p 1 MRRGPAGPRTLCNACGLMLANKGM 24 5*****************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	2.95E-6	1	33	No hit	No description
CDD	cd00202	3.76E-9	1	31	No hit	No description
Pfam	PF00320	4.4E-8	1	23	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.5E-9	1	29	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MRRGPAGPRT LCNACGLMLA NKGMLRDLSK GGRNASFSQT ASGMPFDVKI SFANKGHIST 60 NHDQHIFAEA APIVNEGNDV SFIYGDEEVS ICSILEPGVA LPSYNMPMCS *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010664424.1	1e-23	PREDICTED: GATA transcription factor 24 isoform X1
Refseq	XP_015579792.1	1e-23	GATA transcription factor 20 isoform X2
TrEMBL	F6H147	2e-22	F6H147_VITVI; Uncharacterized protein
STRING	VIT_18s0001g07730.t01	4e-23	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	4e-15	ZIM-LIKE 2

Link Out ? help Back to Top
Phytozome	Kaladp0095s0409.2.p