PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0414.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 274aa    MW: 31447.7 Da    PI: 8.5884
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0414.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.71.9e-251059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n + rqvtfskRrng+lKKA+EL +LCdaev v++fsstgk+++++s
  Kaladp0095s0414.1.p 10 RIDNPTSRQVTFSKRRNGLLKKANELAILCDAEVGVMVFSSTGKVHDFAS 59
                         8***********************************************86 PP
2K-box73.75.3e-2578169898
                K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                          +  ++++ + +q+e+a L++++++Lq+++R+l+ +dL+ L +k+Lq Le++L+ksl++iR++K++ll+++i el  k + +++en +L +
  Kaladp0095s0414.1.p  78 QlDSSSEIKFWQREAATLRQQLQSLQESHRQLMRDDLSGLGIKDLQDLETHLDKSLRSIRTTKDKLLMDEILELNAKGNIVRQENLELYQ 167
                          24678999********************************************************************************99 PP

                K-box  97 kl 98 
                          k+
  Kaladp0095s0414.1.p 168 KV 169
                          96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.684161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.87E-41278No hitNo description
SuperFamilySSF554557.33E-31288IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2382169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.48885181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRGKVVIRR IDNPTSRQVT FSKRRNGLLK KANELAILCD AEVGVMVFSS TGKVHDFASS  60
SMTSVIDRYS KSKEEQQQLD SSSEIKFWQR EAATLRQQLQ SLQESHRQLM RDDLSGLGIK  120
DLQDLETHLD KSLRSIRTTK DKLLMDEILE LNAKGNIVRQ ENLELYQKVY GTKDVHAQCS  180
SITPISRHDL NIGEDAHVPV ELQLCQPQNQ NYETRTRATK LGYLFLKYIN RYYFIKNPHK  240
MNLVGCISQQ TIFAIVEAAK WEDETNDFHQ DVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18182182MEF2C
5f28_B8e-18182182MEF2C
5f28_C8e-18182182MEF2C
5f28_D8e-18182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748926.11e-114PREDICTED: MADS-box transcription factor 23-like isoform X4
SwissprotQ6EP493e-85MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8PCL91e-112A0A1U8PCL9_GOSHI; MADS-box transcription factor 23-like isoform X4
STRINGXP_006472406.11e-104(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-81AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]