PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0538.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 211aa    MW: 23640.7 Da    PI: 9.9018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0538.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd +l+++++  G+++Wk++a + g+ R++k+c++rw +yl
  Kaladp0095s0538.1.p 17 RGAWTPEEDRRLAQVIETQGPRRWKSVAVKAGLSRCGKSCRLRWMNYL 64
                         89********************************************97 PP
2Myb_DNA-binding51.13.1e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Kaladp0095s0538.1.p  70 RGNISAQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                          7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1461264IPR017930Myb domain
SMARTSM007173.8E-141666IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-2816111IPR009057Homeodomain-like
PfamPF002496.3E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-241871IPR009057Homeodomain-like
CDDcd001673.75E-101964No hitNo description
PROSITE profilePS5129425.25265119IPR017930Myb domain
SMARTSM007171.5E-1569117IPR001005SANT/Myb domain
PfamPF002491.2E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2572118IPR009057Homeodomain-like
CDDcd001678.85E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRSLKPGAAA TSMAGNRGAW TPEEDRRLAQ VIETQGPRRW KSVAVKAGLS RCGKSCRLRW  60
MNYLRPNIKR GNISAQEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLSKKAK  120
QCQANNKHAS STDGAGNVEG TRQSASKSTV IVKHNESMMC NNEAASCSNN AKLRMEEQKQ  180
CEEDGGLSME WVSQLLVDID DQSWFLNYYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-29171194105MYB PROTO-ONCOGENE PROTEIN
1h8a_C9e-291611926128MYB TRANSFORMING PROTEIN
1mse_C7e-29171194105C-Myb DNA-Binding Domain
1msf_C7e-29171194105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026437377.18e-72transcription factor WER-like
RefseqXP_026452712.18e-72transcription factor WER-like
TrEMBLA0A251RAS73e-69A0A251RAS7_PRUPE; Uncharacterized protein
STRINGXP_009362719.14e-70(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-54myb domain protein 5