PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0627.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 374aa    MW: 41829.1 Da    PI: 5.1181
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0627.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.7e-083193512355
                          SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Kaladp0095s0627.2.p 319 PYPTEVDKIALAECTGLDQKQINNWFINQRKRH 351
                          8*****************************885 PP
2ELK37.16.9e-13271292122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK+ LlrKYsgy+++Lk+EFs
  Kaladp0095s0627.2.p 271 ELKDKLLRKYSGYISTLKHEFS 292
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.0E-23130174IPR005540KNOX1
PfamPF037901.5E-20132173IPR005540KNOX1
SMARTSM012566.7E-22180231IPR005541KNOX2
PfamPF037911.5E-22184230IPR005541KNOX2
PROSITE profilePS5121310.772271291IPR005539ELK domain
SMARTSM011888.9E-8271292IPR005539ELK domain
PfamPF037899.6E-11271292IPR005539ELK domain
PROSITE profilePS5007111.742291354IPR001356Homeobox domain
SuperFamilySSF466893.68E-19292364IPR009057Homeodomain-like
SMARTSM003897.1E-12293358IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-27296355IPR009057Homeodomain-like
CDDcd000861.89E-11303355No hitNo description
PfamPF059205.3E-17311350IPR008422Homeobox KN domain
PROSITE patternPS000270329352IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLFTCRRLQI YTYTLVYRFL LSSSKTTMDE MYGCLHYATL DLASSTPPPP PLPLPLPSLS  60
HHHNPLLLSP LPPPPNSSLI SPDDDFAFRD HYHQPMFGSD HPSSFFSMSS AMSDAASAVA  120
AEIQDGDFSS ALRARIAAHP LYPRLVEAYI DCQKVGAPPD VAYVLDEIRR ENDLSGAASV  180
TTCFGADPEL DEFMESYCDI LAKYRSDLAK PFHEATSYLN SMEAQLSSLC NYNGASLGHV  240
SDDAAGSSEE ELSGGESADI MGFLPNSEDQ ELKDKLLRKY SGYISTLKHE FSKKKKKGKL  300
PKDAKQVLLG WWNDHYKWPY PTEVDKIALA ECTGLDQKQI NNWFINQRKR HWKPSENMQF  360
AVMDTDSLLY TNE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282076.11e-130PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-107KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7SHP31e-129D7SHP3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08710.t011e-130(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-87KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]