PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0095s0854.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 262aa MW: 29610.5 Da PI: 9.8481

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0095s0854.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.1	2.1e-10	81	162	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h++k+ + ++tled++g++ k+ ++++ ++++L +gD +vF+l++ ++f Kaladp0095s0854.1.p 81 FVKPMLQSHVTGGFWLGLPQRFCKAHMSKE--DEMMTLEDKDGNESPSKYLADRTG------------LNDHELVDGDALVFQLIRPTKF 156 89**********************9884..559***********444444............57*************97777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kaladp0095s0854.1.p 157 --KVYIIR 162 ..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-17	74	164	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-12	76	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.06E-18	79	162	No hit	No description
SMART	SM01019	2.3E-13	81	164	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-9	81	162	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVASATSNYE ERRRQRLEKN KKRMEELNLL NLSKSLSAAT PKLSPAKKQW KPKSARKEVD 60 LSAVRRAEQL ELELGSEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMSKE DEMMTLEDKD 120 GNESPSKYLA DRTGLNDHEL VDGDALVFQL IRPTKFKVYI IRVNEHENGD DSNEDVADED 180 GNDVVLLKSV PKAKPRKVAK PRKVAEPSPG TRRSRRKKST DEDEDDGDDF FLVKVPETKS 240 GELTDPSAGT RRSKRIKSSR K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279750.1	1e-61	B3 domain-containing protein At3g19184-like isoform X1
Refseq	XP_021279758.1	8e-62	B3 domain-containing protein At3g19184-like isoform X2
Swissprot	Q1G3M3	1e-47	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2I4DLT7	3e-59	A0A2I4DLT7_JUGRE; B3 domain-containing protein At3g19184-like
STRING	EOX98227	8e-60	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0095s0854.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]