PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0026.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 198aa    MW: 22949.5 Da    PI: 7.063
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0026.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-164892147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg+++++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w+ +
  Kaladp0096s0026.3.p 48 RGNMSEDEEDLIQRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 92
                         89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-202697IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-102754IPR009057Homeodomain-like
PROSITE profilePS500904.3792842IPR017877Myb-like domain
PROSITE profilePS5129422.814397IPR017930Myb domain
SMARTSM007175.3E-154795IPR001005SANT/Myb domain
PfamPF002492.3E-144892IPR001005SANT/Myb domain
CDDcd001675.57E-105093No hitNo description
Gene3DG3DSA:1.10.10.606.8E-205594IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEIRRRSETG RICSKTRCQE MESNCRKNRS GKSCRLRWLN YLKPGIKRGN MSEDEEDLIQ  60
RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN FHLKTRVLGE TETNNIPSKH KTSRTSYYEK  120
EPTTSGNNNH ECHAGNPNAN QIDNECQAAG NLNANQINEA DNCFDWSPHI SDCSEWVNRL  180
LDLDVEQWLQ EDMDILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-19279738108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-36myb domain protein 5