PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0037.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 204aa    MW: 21826.4 Da    PI: 5.1179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-173888155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr++  r rWv+e+r+p   +k++r++lg+f t  +Aa+a++ a+++l+g
  Kaladp0096s0037.1.p 38 PVYRGVRRRN-RDRWVCEVREP---NKKTRIWLGTFPTLVMAARAHDVAALALRG 88
                         68*****887.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-133888IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-303998IPR001471AP2/ERF domain
PROSITE profilePS5103220.893996IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-203998IPR016177DNA-binding domain
SMARTSM003802.6E-2539102IPR001471AP2/ERF domain
PRINTSPR003672.1E-64051IPR001471AP2/ERF domain
CDDcd000181.16E-205198No hitNo description
PRINTSPR003672.1E-66278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDASASSNDD VSSSAPLLAA SNPKRRAGRK KFTETRHPVY RGVRRRNRDR WVCEVREPNK  60
KTRIWLGTFP TLVMAARAHD VAALALRGSR ACLNFADSAW RLPVPGSLDA GEIRRAALEA  120
AEMFRPGTAS FDDGAGSSGS YGGDDDFDDV AIISSDGGSA IGGGGVFELD VEYFLGVNSR  180
ELMVEMAEGL MVAPPPYWEA EGV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021666582.15e-65dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ931e-58DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A022PVI83e-62A0A022PVI8_ERYGU; Uncharacterized protein
TrEMBLA0A2P5D9F63e-62A0A2P5D9F6_PARAD; AP2/ERF domain containing protein
STRINGMigut.F01149.1.p5e-63(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-22ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]