PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0163.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 343aa    MW: 37284 Da    PI: 10.3545
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0163.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-1682127147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+++W++Ia++++ gR++k+c++rw++ 
  Kaladp0096s0163.1.p  82 RGHWRPAEDAKLKHLVAHFGPHNWNLIAHKLQ-GRSGKSCRLRWFNQ 127
                          899*****************************.***********996 PP
2Myb_DNA-binding48.32.3e-15135177246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++ eE+ +l+ a++ lG++ W++Ia+  + gRt++ +k++w+ 
  Kaladp0096s0163.1.p 135 RAFSDEEEGRLLAAHATLGNK-WALIAKLYP-GRTDNAVKNHWHV 177
                          689******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.00477128IPR017930Myb domain
SMARTSM007171.7E-1381130IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-2682178IPR009057Homeodomain-like
PfamPF002491.4E-1582127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2583135IPR009057Homeodomain-like
CDDcd001675.25E-1385126No hitNo description
PROSITE profilePS5129423.913129183IPR017930Myb domain
SMARTSM007175.3E-12133181IPR001005SANT/Myb domain
PfamPF002494.0E-13135176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-19136183IPR009057Homeodomain-like
CDDcd001671.70E-9136176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVTVKPSIMM SRLLPPAPVS YTCYDPPRKN PSQTRHFHSL LLPPTATDAQ VDAKKTSIVQ  60
GGRPILETDS SDGGAVVKVC SRGHWRPAED AKLKHLVAHF GPHNWNLIAH KLQGRSGKSC  120
RLRWFNQLDP KINKRAFSDE EEGRLLAAHA TLGNKWALIA KLYPGRTDNA VKNHWHVIVA  180
RRLREQSRHC YKQQQQQSLS LGTNTHQLER SINLASNGGG LAYSDDVSRS TIVDEYNPSA  240
TASVDLSLSP TSVAASFGKF HQHHYFLERG SGQSVGAAGS SKHTADTASA AASRNVRGCR  300
VVVCGGNGKE SAQNENNNGV SKSKSKSKIV HYFDFLGLGP AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31821837108B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254925.14e-70PREDICTED: myb-related protein 330
TrEMBLA0A161ZXU18e-69A0A161ZXU1_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.15e-65myb domain protein 56