PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0098s0053.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 182aa    MW: 21480.3 Da    PI: 6.9697
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0098s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1998151457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          + ++++eql++Le+ F+++ +++ e++ +LA++lg++ rq+ vWFqNrRa++k+
  Kaladp0098s0053.1.p  98 KKRLNDEQLDALERNFREEIKLDPERKMRLARELGMQPRQIAVWFQNRRARWKN 151
                          45699***********************************************95 PP
2HD-ZIP_I/II112.13.7e-3697179284
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                          kk+rl++eq+ +LE++F+ee kL+perK++lareLg+qprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+ rL++ev
  Kaladp0098s0053.1.p  97 KKKRLNDEQLDALERNFREEIKLDPERKMRLARELGMQPRQIAVWFQNRRARWKNKQLERMYDALKQEFDVVSREKLRLQEEV 179
                          9*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-2080154IPR009057Homeodomain-like
PROSITE profilePS5007116.98992152IPR001356Homeobox domain
SMARTSM003893.0E-1694156IPR001356Homeobox domain
CDDcd000864.33E-1697153No hitNo description
PfamPF000462.4E-1698151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2099160IPR009057Homeodomain-like
PRINTSPR000311.7E-5123132IPR000047Helix-turn-helix motif
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5132148IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEPWSNGGSN SIIRPPFLAA RPENNPLNFL YYYNYDDQHQ GCLEQVEAHP GMMMMEPVSP  60
HHVLTSHHSM ENANNPHDDL MMSAKSGHSY GNVQDLKKKR LNDEQLDALE RNFREEIKLD  120
PERKMRLARE LGMQPRQIAV WFQNRRARWK NKQLERMYDA LKQEFDVVSR EKLRLQEEVT  180
F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARWKNKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069703.12e-50putative homeobox-leucine zipper protein ATHB-51
RefseqXP_027173501.12e-50putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A068V4485e-50A0A068V448_COFCA; Uncharacterized protein
STRINGMigut.J00491.1.p2e-46(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-38homeobox 51