PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0098s0168.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 703aa    MW: 77872.2 Da    PI: 8.3758
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0098s0168.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98.2e-2368169199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g  W++++iyr++++r++lt+GW+ Fv++++L  gD v+F  
  Kaladp0098s0168.2.p  68 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVGWRFRHIYRGQPRRHLLTTGWSLFVSQKNLGLGDAVLFL- 155
                          99****************************963.3445679************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+++++r+
  Kaladp0098s0168.2.p 156 -RGENGELRLGIRRA 169
                          .4499999****996 PP
2Auxin_resp105.37.3e-35194275182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+ tk++F+v+Y+Pra++++Fv++++k++k++ +++  G+Rf m++e++ds+err+sG+v+g+ dldp+rWpnSkWr+L
  Kaladp0098s0168.2.p 194 VASAILTKNIFHVFYSPRATHADFVIPIQKYMKSIINPIPTGTRFVMRLEMDDSPERRCSGIVTGLGDLDPYRWPNSKWRCL 275
                          678999***************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-3961177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-4262180IPR015300DNA-binding pseudobarrel domain
CDDcd100176.60E-2266168No hitNo description
SMARTSM010196.3E-2368170IPR003340B3 DNA binding domain
PROSITE profilePS5086312.61968170IPR003340B3 DNA binding domain
PfamPF023624.0E-2168169IPR003340B3 DNA binding domain
PfamPF065073.1E-29195275IPR010525Auxin response factor
PROSITE profilePS5174517.215566648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MPTYDLQPQI FCRVVNVQRL ANKENDEVYT QLSLLPQPEL VGSSLSRSDL LSANGNDEPA  60
LKSTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVGWRF  120
RHIYRGQPRR HLLTTGWSLF VSQKNLGLGD AVLFLRGENG ELRLGIRRAV RPRNCLPDSS  180
IGNHSSLPTV LSSVASAILT KNIFHVFYSP RATHADFVIP IQKYMKSIIN PIPTGTRFVM  240
RLEMDDSPER RCSGIVTGLG DLDPYRWPNS KWRCLTVRWD EGHATNHQER VSPWEVDASI  300
RLPSPLSFHG SPQLKKLRTC LQSSLQSGIA DDISTAGRSG FLDFEESIRS SSKVLQGQEN  360
SGLPSPLYRG DKVNHPLGCC SEVPYLVNQL LLPPRPDHVT VPERLNIQTT GYTTLGKSDV  420
FPTVLQGQEV CPYSAWRKSS IGCNMFSTHQ RPKPSFYPVG SAGSRSVYFP PHSRIQKEMQ  480
GTAMSISARF TGGSGSFSRP WVHNGMNIDE AQVTAQKLPE DASMPYSLEM NTKDGRNETA  540
SVTPTGCRLF GISLTADTSP QNASKRSCTK VHKQGSMVGR AIDLSKLNGY TDLLFELEWL  600
FGMEGLLRDP QKGWRILYTD SQNNMMAVGE DPWHEFCEAV SKIHIYTKEE VEKLSIGVTS  660
DETQSCLEEA PGDAGVSKSS SAGHPDSSPT KKKGYRVLLL SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-101129764353Auxin response factor 1
4ldy_B1e-101129764353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279163.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLD7SKV90.0D7SKV9_VITVI; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]