PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0098s0232.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 568aa    MW: 65079.3 Da    PI: 7.246
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0098s0232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.61.9e-29112196186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          rW++qe+l+L+e+r+++++++++++ k+plW+e+s+ m  e+g++rs k+C+ek+enl k+ykk+k+g+ +r  ++ +++++f+qle
  Kaladp0098s0232.1.p 112 RWPRQETLTLLEIRSRLDNKFKEANHKGPLWDEISRIMsDEHGYQRSGKKCREKFENLYKYYKKTKDGKAGR--QDGKHYRFFRQLE 196
                          8*************************************99******************************98..55667******98 PP
2trihelix40.47.8e-13409473159
             trihelix   1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnk 59 
                          +W ++e+ +L++ r  me ++++ +      ++  lWee+++km++ g+++s+ +Ck+kwe++n 
  Kaladp0098s0232.1.p 409 QWAESEITKLVQTRAGMELKFEQYSgqcdwgQEFVLWEEIANKMASLGINKSASMCKNKWESINS 473
                          7*********************854456777*******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.023109172IPR001005SANT/Myb domain
PROSITE profilePS500907.12111170IPR017877Myb-like domain
PfamPF138371.5E-20112197No hitNo description
CDDcd122032.53E-21112177No hitNo description
PROSITE profilePS500906.063402472IPR017877Myb-like domain
SMARTSM007175.8406474IPR001005SANT/Myb domain
PfamPF138377.3E-9408473No hitNo description
CDDcd122033.85E-14408473No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MEEHHHNHRQ YEVVPDFGLA PTPCYPCTMH PADIRYVTGS PNSAAQHFDM FMMSHHHQNF  60
QQLLQESDHQ PRSQHHEMMM HNSNHNNGFS ATVGGFAEAN ILDGGSGGGG GRWPRQETLT  120
LLEIRSRLDN KFKEANHKGP LWDEISRIMS DEHGYQRSGK KCREKFENLY KYYKKTKDGK  180
AGRQDGKHYR FFRQLEDLYG ENKTNYVPPL LPLRETSHFL EQNCFEHLKN TPSCCNHANR  240
PKLGSNTNYN SGGHHNFHSL SLSSNSSEFD TISCSEDYND LSGTGVCDNG SSDKKRKGGR  300
NWKAKIKGHI DSQMKRLVEK QEAWLAEIMK TIEQTEKERL LREEEWKTKE VERMDRERMF  360
WANERQWIEA RDANLMEALH KFKGGEVLGA FNCYHFMSAD HIDNKHNNQW AESEITKLVQ  420
TRAGMELKFE QYSGQCDWGQ EFVLWEEIAN KMASLGINKS ASMCKNKWES INSCLVSRNK  480
GDFGYKKQKG DSSRISSSGC YGTGDHGRVE GIPVFGGIGS DQATHNFSSM SSSNMDPTNN  540
SNVQQESFFR FLMVDHVGSE NIWSNKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-84Trihelix family protein