PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0099s0035.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 107aa MW: 11681.7 Da PI: 4.4751

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0099s0035.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.4	5.8e-12	14	64	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 r WT eEd l+ da++++ + +W+ + r+mg +t +++++++q + Kaladp0099s0035.1.p 14 RTTWTREEDVLFEDAFALYHNQdpstRWENVVRHMGGSKTVEEVIHHYQLL 64 678*******************************99********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.586	9	65	IPR017877	Myb-like domain
SMART	SM00717	4.3E-6	13	67	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-9	14	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.88E-10	15	71	IPR009057	Homeodomain-like
CDD	cd00167	3.35E-8	17	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MAGSTNSNSS SPSRTTWTRE EDVLFEDAFA LYHNQDPSTR WENVVRHMGG SKTVEEVIHH 60 YQLLVEDVNN IEAGRIALPA YGDGDTAEAL GGGGGLGYNL SYFFFH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423283.1	2e-20	protein RADIALIS-like 3
Refseq	XP_006469147.1	2e-20	protein RADIALIS-like 3
Swissprot	Q6NNN0	1e-16	RADL3_ARATH; Protein RADIALIS-like 3
TrEMBL	A0A067E8G3	4e-19	A0A067E8G3_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PY89	4e-19	A0A2H5PY89_CITUN; Uncharacterized protein
TrEMBL	V4RQ20	4e-19	V4RQ20_9ROSI; Uncharacterized protein
STRING	XP_006469147.1	7e-20	(Citrus sinensis)
STRING	XP_006423283.1	7e-20	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	3e-16	RAD-like 6

Link Out ? help Back to Top
Phytozome	Kaladp0099s0035.1.p