PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0099s0038.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 109aa    MW: 12137 Da    PI: 4.2156
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0099s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-101765347
                         SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                          WT eEd+++ +a +++       +W+ + r mg+ +t +++++++q +
  Kaladp0099s0038.1.p 17 TWTREEDKRFEEALALYIDQdpstRWDNVVRQMGESKTVEEVIHHYQLL 65
                         7****************988**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2021066IPR017877Myb-like domain
SMARTSM007177.1E-61468IPR001005SANT/Myb domain
PfamPF002494.3E-81664IPR001005SANT/Myb domain
CDDcd001672.67E-71766No hitNo description
SuperFamilySSF466893.12E-91873IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSSSNNSNSA TPSRTTTWTR EEDKRFEEAL ALYIDQDPST RWDNVVRQMG ESKTVEEVIH  60
HYQLLVDDVN NIEAGRISLP DYVDDDTDEA LSTSSPPSNS NDKCRGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1518821173RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423283.12e-21protein RADIALIS-like 3
RefseqXP_006469147.12e-21protein RADIALIS-like 3
TrEMBLA0A067E8G34e-20A0A067E8G3_CITSI; Uncharacterized protein
TrEMBLA0A2H5PY894e-20A0A2H5PY89_CITUN; Uncharacterized protein
TrEMBLV4RQ204e-20V4RQ20_9ROSI; Uncharacterized protein
STRINGXP_006469147.16e-21(Citrus sinensis)
STRINGXP_006423283.16e-21(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-19RAD-like 6