PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0099s0041.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 341aa    MW: 38212.9 Da    PI: 8.6258
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0099s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.32.7e-31107163259
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          ++vrY+eClkNhAas+G+++vDGCgEfmp  g+egt +alkCaAC CHRnFHRre e 
  Kaladp0099s0041.1.p 107 SGVRYRECLKNHAASMGTNVVDGCGEFMPG-GKEGTLEALKCAACHCHRNFHRRELEG 163
                          579**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.1E-29109161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-20109162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-29110160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.802111160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-29230299IPR009057Homeodomain-like
SuperFamilySSF466894.24E-19231299IPR009057Homeodomain-like
TIGRFAMsTIGR015656.8E-28238294IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEQPQYHHHH HQLKLSQQQH HTTTPSPPRN LPPPPPPPLP SLAYPPSSIQ QPSLPTSEAD  60
DVEDKKNGVL PHVASAGMYG GGGGELQSPE SLAGTRSKAV KSGSPSSGVR YRECLKNHAA  120
SMGTNVVDGC GEFMPGGKEG TLEALKCAAC HCHRNFHRRE LEGHDSGSGN FARSVIVHPL  180
HLPPQTQIPF RHPHHHRHRI VQPVAVAYGG GATESSSEDL VQVFDEMPQR EIEPGSGRKR  240
FRTKFTQEQK DKMLGFAERL GWRLQRQDDE MVAKFCNEIG IRRQVLKVWM HNNKSSFKKP  300
PVDEDQHQQQ PTHPQIQLHP QHHHLLHLHH QHQQKQQETL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-252392961875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022951673.15e-73zinc-finger homeodomain protein 2-like
SwissprotO647222e-60ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2P6PYR53e-70A0A2P6PYR5_ROSCH; Putative transcription factor ZF-HD family
STRINGcassava4.1_022551m2e-69(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.19e-62homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]