PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0099s0085.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 397aa    MW: 43274.8 Da    PI: 8.5786
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0099s0085.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17143192155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Kaladp0099s0085.2.p 143 SPYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 192
                          68*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-15143201IPR016177DNA-binding domain
PROSITE profilePS5103217.714144200IPR001471AP2/ERF domain
SMARTSM003803.5E-32144206IPR001471AP2/ERF domain
PfamPF008474.0E-9145192IPR001471AP2/ERF domain
CDDcd000181.12E-11145200No hitNo description
Gene3DG3DSA:3.30.730.106.3E-17145200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MFDLNIHYSH HHQSPHPSST DSAATSSSSV IVNSTSAGDE DSASINNHTS APPSTLFFDI  60
LNRDHENPVP VAGAGLVART LFPSAVESSS SPAVVPQWLN LSFADSASSH SELCSLQQPN  120
HHNLQQLKPV GKKSRRGPRS RSSPYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA  180
RAYDRAAIKF RGVDADINFD LKDYDNDMKQ MAELSKEEFV HVLRRQSTGF ARSSSKYKGV  240
TLHKYGRPDH AGLGQALAQS FYPVVFDREA AFARYNEGEA VTNTEANTYP RGYLTLNPIN  300
KGSDGTLDLS LGITPTSNNS CPTGTNITAI PGLPAYARHG RDRDMFNASA VRVLCGQPSS  360
HGFTNPSPTV WQFQQHPSNP AHMPQIKVTS TSASYP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447127.13e-77PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X4
SwissprotB8AMA93e-64AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB53e-64AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0D2TMQ03e-75A0A0D2TMQ0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8PH348e-76A0A1U8PH34_GOSHI; ethylene-responsive transcription factor RAP2-7-like isoform X3
STRINGGorai.009G104200.15e-76(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-58related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]