PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0100s0025.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 415aa    MW: 46223.8 Da    PI: 5.8211
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0100s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.6e-331132051102
                          HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          +Fl+k+yei+++++++ l++w  +g+sfvv+d + f + +LpkyFkh++f+SF+RQLn+YgF+k++  +         weF++++F++gk
  Kaladp0100s0025.1.p 113 QFLSKIYEIVDNPNTDYLVQWGFDGKSFVVHDANAFCQFILPKYFKHNHFSSFIRQLNTYGFRKIDAAK---------WEFANEQFQRGK 193
                          69***************************************************************9988.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          ++ll++ikr++s
  Kaladp0100s0025.1.p 194 RHLLKYIKRRRS 205
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-34106197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-47110203IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-31110203IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-17114137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-29114203IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17152164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-17165177IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAKLEYELLR EFDRVVAQCD QAQKTRGDSS NTSLTNHELG LITANPTSGV SEAGSNASTS  60
HVNNKIPETA AEMAAEVATI GQGTDVVPSF LPQDQVILSR QMHGKLRDKS VPQFLSKIYE  120
IVDNPNTDYL VQWGFDGKSF VVHDANAFCQ FILPKYFKHN HFSSFIRQLN TYGFRKIDAA  180
KWEFANEQFQ RGKRHLLKYI KRRRSGNRMR FESEKQDENL QKALSAKITN LNKQVEVSHS  240
LISAFEERVQ VIELKYKKMA SFLSQTIQNP GLVAELVRGK ASVEAKHGGK PSEQKIATVV  300
SDETTKASSA SNHMLLVNAQ TPNQTTEMKT SVSITAPSFG ESSSSPTEPQ GSAEEMVLNS  360
LESLQDELMN ESEACEGIVT EQCLSYFHEL ESLIEEESDG WVAYVDAQPI DRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-2211020325129Heat shock factor protein 1
5d5v_B5e-2211020325129Heat shock factor protein 1
5d5v_D5e-2211020325129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202LKYIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.14e-50heat shock transcription factor A7A