PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0100s0039.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 193aa    MW: 20573.8 Da    PI: 7.2894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0100s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-195099255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa+ kl+g
  Kaladp0100s0039.1.p 50 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDAAAIKLYG 99
                         69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.48E-2149108No hitNo description
PROSITE profilePS5103222.64250107IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2250108IPR016177DNA-binding domain
PfamPF008471.5E-145099IPR001471AP2/ERF domain
SMARTSM003801.2E-3350113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3050108IPR001471AP2/ERF domain
PRINTSPR003676.4E-105162IPR001471AP2/ERF domain
PRINTSPR003676.4E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSSSYSSSST SSSSSEKLLA RGSPGRKRGQ GTSRKGCMRG KGGPENAACT YKGVRQRTWG  60
KWVAEIREPN RGARLWLGTF DTSREAALAY DAAAIKLYGS DAKLNLPDPI LNPTTNDHST  120
NNASSNNYGL ATGSGKYDAV SDAEKMDVVD EELWAEAAKT LEFPIMEGPG IFGNQCVDGN  180
GLEVVMHSPW CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1851107663ATERF1
3gcc_A1e-1851107663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686999.11e-58PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-46DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1U8JFD63e-57A0A1U8JFD6_GOSHI; dehydration-responsive element-binding protein 2D-like
STRINGGorai.009G271400.12e-57(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]