PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0100s0054.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 314aa    MW: 34825.4 Da    PI: 6.993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0100s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000241952331154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          rR +++ +++  L++l+ +      +K + a++L++A  YIk+L
  Kaladp0100s0054.1.p 195 RRSQKLGDKITILQKLVSPY-----GKTDTASVLQEAEIYIKQL 233
                          7889999**********999.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.966184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-5195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-7195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMSLHAAEIQ NDMLPSLPPQ LYIYCNDSEA QMQSLEFALT NGKVNPLGSD YLCDYDSRLI  60
LNEVGVGIAE YVIPHTTNGY NYQAESSSSS TAERVGYPYS VVENCFMESQ ICDSGLPEFS  120
LPNSQNLVVS PPAIDLRNVK RKQQMEQYSS KSAVANNDTI SRIKRRTNTN NGTRNNNQPH  180
ILETECDYSK VPAVRRSQKL GDKITILQKL VSPYGKTDTA SVLQEAEIYI KQLHTKIANM  240
YELLSSSHVN AATLSQLDAL GGMRTIPLDL RQRGLCVMPV AITRDLTRNN GTMDRGCLAA  300
RTGNNFPTNI IRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-17bHLH family protein