PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0100s0111.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13593.7 Da    PI: 7.9811
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0100s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22.1e-08639942
                         HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         r+  f kRr+ ++ KA  +S+L++ e++ +++s+
  Kaladp0100s0111.1.p  6 RKAIFRKRRECLMRKATQISTLTGEEACGVVLSP 39
                         677799**********************999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.06E-12478IPR002100Transcription factor, MADS-box
PfamPF003196.6E-8539IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MHPQLRKAIF RKRRECLMRK ATQISTLTGE EACGVVLSPP VYWPPSINGV LDRFLSLHEA  60
DQCKKMTTPD SFMQEKIAKM EEEVNKEHRK ATDQEINYVT HSIYSHGKPI DCLTFGET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.14e-14AGAMOUS-like 38