PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0020.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 365aa    MW: 39293.3 Da    PI: 7.8049
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA512e-16267300134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  Kaladp0101s0020.1.p 267 CLHCEITKTPQWRAGPMGPKTLCNACGVRHKSGR 300
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.2E-699341IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.266261297IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-15261311IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-14265298IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.09E-14265324No hitNo description
CDDcd002023.64E-13266313No hitNo description
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
PfamPF003204.1E-14267300IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRSWFLEKMS ADPTSLVVED LDCNSFFGHI EDLLDFPEVN NKNSHNAPLV APGLAWNAPP  60
YSFFNPDLLF IGKGSACTQD LAAELSIPYE DIVQMEWLST FVEDSFSGGD SMTLDKKSFP  120
STKEASADAA VAPVQFLSSS PISVLESSSS SSCSEGSKAL LVSPDSARVR GGCGRPRSKR  180
PRPHTFKPGS AMQLISPAQS FTDTPQLSAS HGAFQGNKFK QSPHLTTEQN KKRKMKPSSS  240
PATPAAEMSN NETGAADPQS QAGVRKCLHC EITKTPQWRA GPMGPKTLCN ACGVRHKSGR  300
LFPEYRPAAS PTFVPSLHSN SHKKVLEMRT ATVHTPATTP PGGKMGSDTH PELIPNEKAI  360
LEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574762.16e-91GATA transcription factor 8 isoform X2
RefseqXP_006574763.16e-91GATA transcription factor 8 isoform X2
RefseqXP_028199239.16e-91GATA transcription factor 8-like isoform X2
RefseqXP_028199247.16e-91GATA transcription factor 8-like isoform X2
TrEMBLA0A445LKP31e-89A0A445LKP3_GLYSO; GATA transcription factor
TrEMBLK7K6X91e-89K7K6X9_SOYBN; GATA transcription factor
STRINGGLYMA02G08145.22e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-38GATA family protein