PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0026.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GeBP
Protein Properties Length: 345aa    MW: 38565.4 Da    PI: 6.4297
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.23.8e-31110202597
               DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                          rlws eDe+++L G++d+k++tg++p +++ afy+++k+s+++ v +sql +Kir+LK+K++ + +k ++g+ p+f ++h+ +++e+s+k
  Kaladp0101s0026.1.p 110 RLWSPEDELMILTGMLDYKENTGVDPNSNLLAFYNYIKGSLNASVDQSQLKNKIRKLKDKYRANAHKEATGQTPVFVRSHEAEAYEHSRK 199
                          9***************************************************************************************** PP

               DUF573  95 iWg 97 
                          +Wg
  Kaladp0101s0026.1.p 200 LWG 202
                          **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.8E-27110202IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPRNRLPASV NPPDESQSEE DGDEVGQADG GAGNRHEDKS YEEAESEGDS SSVKTMSQNL  60
RPEMKKRPPP DSDLKEVNKK KMSKKNNGFG VGAEDDDKGK KSEKSGGGLR LWSPEDELMI  120
LTGMLDYKEN TGVDPNSNLL AFYNYIKGSL NASVDQSQLK NKIRKLKDKY RANAHKEATG  180
QTPVFVRSHE AEAYEHSRKL WGDQTMSRGP QLTKSKPKRE NEFGIVQNEL ESVLALPVTQ  240
PEVDTKIVKG CSDKLVGRAG KHVPKMMHLD ETDLKTKYAT ISMPSMIDNF MVKKGLELIE  300
KSKLDDLNEK WNKYQIDAAE LYVKRLELEQ EHIKLIGEAL KGDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-20DNA-binding storekeeper protein-related transcriptional regulator