PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0229.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 316aa    MW: 35641.7 Da    PI: 5.9968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0229.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19112162155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ +l+g
  Kaladp0101s0229.1.p 112 KKYRGVRQRP-WGKWAAEIRDPQ----RrVRLWLGTYNTAEEAAMVYDNAAIQLRG 162
                          59********.**********93....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-33112172No hitNo description
SuperFamilySSF541712.48E-22113171IPR016177DNA-binding domain
SMARTSM003809.7E-39113176IPR001471AP2/ERF domain
PfamPF008473.2E-13113162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-31113170IPR001471AP2/ERF domain
PROSITE profilePS5103224.447113170IPR001471AP2/ERF domain
PRINTSPR003672.1E-10114125IPR001471AP2/ERF domain
PRINTSPR003672.1E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MFNQVKYTEH KEASTIVLHD QSDLPKVLRI SLTDSYATDS SSDEEQLQRS LARRVRIKKY  60
VHEISIKPSG THAENTSENR LPKKCRKLAG KTYNQPSQTQ SKTTIPSRRI EKKYRGVRQR  120
PWGKWAAEIR DPQRRVRLWL GTYNTAEEAA MVYDNAAIQL RGPDALTNFP PHLTPIQQMQ  180
TQKKLESIAT TTSGKDSLSP RVCSPTSVLR FQSESAESQL SETQEEDKGK TGILNDFAEE  240
LDSFLHQNDA FNLDFFPDSC IPNDTSFLSQ DFGVEDFLMC EPGFGYGSLS SKWGSDDFFQ  300
QDIGDLFGSD PLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22112170160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746165.13e-70ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2J6JNU47e-69A0A2J6JNU4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-63cytokinin response factor 2