PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0101s0253.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 388aa MW: 42992.3 Da PI: 6.2894

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0101s0253.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.5	2.3e-20	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq+t++kR+ngilKKA+EL +LCd++ +++fs+tgk Kaladp0101s0253.1.p 9 KRLENSNGRQTTYAKRKNGILKKANELAILCDIDLILLMFSPTGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.717	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.6E-29	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.18E-24	2	81	No hit	No description
SuperFamily	SSF55455	3.92E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.4E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGRVKLKIKR LENSNGRQTT YAKRKNGILK KANELAILCD IDLILLMFSP TGKPSLCCGK 60 RGVEEVISKF AQMTPQERAK RQLEGLEALK KTFKKLDHDV NIQDFLGAST QTVEGLTEQT 120 IQLRTELEET QQRLSYWSDP SRIESIDHLG QLEESLGKSL DAIRARKENL EKQHLILQET 180 TAQIQNELQM PYRVNLEQHY QPLPWIAPND APHIPLAEDP NLIPQREIEC AANSSFAAYS 240 SYLDLCKRAQ SGAFRDDSGF LSELGRSSPL GQLINGQYSL PSYSSNLMGS NTKYPGDTNL 300 QNSFHLEPQP TFGTHPAFDT NHTSWPPTSG PFADAIHSSW ASPCGPLVDG VWGSPSGPCA 360 ATTTSGNWAS PGSYPVALFD EHYQQPH*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGRVKLKIKR LENSNGRQTT YAKRKNGILK KANELAILCD IDLILLMFSP TGKPSLCCGK  60
RGVEEVISKF AQMTPQERAK RQLEGLEALK KTFKKLDHDV NIQDFLGAST QTVEGLTEQT  120
IQLRTELEET QQRLSYWSDP SRIESIDHLG QLEESLGKSL DAIRARKENL EKQHLILQET  180
TAQIQNELQM PYRVNLEQHY QPLPWIAPND APHIPLAEDP NLIPQREIEC AANSSFAAYS  240
SYLDLCKRAQ SGAFRDDSGF LSELGRSSPL GQLINGQYSL PSYSSNLMGS NTKYPGDTNL  300
QNSFHLEPQP TFGTHPAFDT NHTSWPPTSG PFADAIHSSW ASPCGPLVDG VWGSPSGPCA  360
ATTTSGNWAS PGSYPVALFD EHYQQPH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018845248.1	1e-123	PREDICTED: agamous-like MADS-box protein AGL30 isoform X4
Swissprot	Q1PFA4	3e-92	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2I4GMY3	1e-122	A0A2I4GMY3_JUGRE; agamous-like MADS-box protein AGL30 isoform X4
STRING	XP_004298422.1	1e-115	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	3e-77	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Kaladp0101s0253.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]