PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0270.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 98aa    MW: 10936.3 Da    PI: 10.0238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0728641954
                         HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +++L+ l+P+ +s+ ++ + s + +L+++++YIk L
  Kaladp0101s0270.1.p 28 LLSKLQHLIPEaRSRRSGNRASASKVLQETCDYIKRL 64
                         689********666777777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.108964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.63E-72783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-42864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-72969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSRSRSSRS RQHSSSSATI SEDQVLHLLS KLQHLIPEAR SRRSGNRASA SKVLQETCDY  60
IKRLHKEVDD LSERLAELLA TMDVDNAQAA VIRNLFM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559055.14e-34PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX12e-28PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK001e-32A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD161e-32A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6451e-32A0A2G3A645_CAPAN; transcription factor PRE6-like
STRINGSolyc02g067380.2.16e-33(Solanum lycopersicum)
STRINGXP_009758713.16e-33(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-23bHLH family protein